4JKW Structure of the extracellular domain of butyrophilin BTN3A1 in complex with Isopentenyl pyrophosphate (IPP) date 2013-03-12
authors Kumar, A., Mori, L., Libero, G.De.
compound source
symmetry
R_factor
R_Free 0.26838
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.01
ligand IPE enzyme
Primary referenceButyrophilin 3A1 binds phosphorylated antigens and stimulates human gammadelta T cells., Vavassori S, Kumar A, Wan GS, Ramanjaneyulu GS, Cavallari M, El Daker S, Beddoe T, Theodossis A, Williams NK, Gostick E, Price DA, Soudamini DU, Voon KK, Olivo M, Rossjohn J, Mori L, De Libero G, Nat Immunol. 2013 Sep;14(9):908-16. doi: 10.1038/ni.2665. Epub 2013 Jul 21. PMID:23872678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (4jkw.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4JKW
  • CSU: Contacts of Structural Units for 4JKW
  • Structure Factors (124 Kb)
  • Retrieve 4JKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JKW from S2C, [Save to disk]
  • Re-refined 4jkw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JKW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JKW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jkw_A] [4jkw]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JKW: [IG ] by SMART
  • Other resources with information on 4JKW
  • Community annotation for 4JKW at PDBWiki (http://pdbwiki.org)

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