4JML Crystal structure of the TolB(P201C)-ColicinE9 TBE peptide(A33C) complex. date
authors Wojdyla, J.A., Klein, A., Kleanthous, C.
compound source
symmetry
R_factor
R_Free 0.2257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand CA enzyme
Gene ECDH1ME8569 ; ECDH1
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntrinsically disordered protein threads through the bacterial outer-membrane porin OmpF., Housden NG, Hopper JT, Lukoyanova N, Rodriguez-Larrea D, Wojdyla JA, Klein A, Kaminska R, Bayley H, Saibil HR, Robinson CV, Kleanthous C, Science. 2013 Jun 28;340(6140):1570-4. doi: 10.1126/science.1237864. PMID:23812713
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (4jml.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 4JML
  • CSU: Contacts of Structural Units for 4JML
  • Structure Factors (1406 Kb)
  • Retrieve 4JML in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JML from S2C, [Save to disk]
  • Re-refined 4jml structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JML in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JML
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JML, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jml] [4jml_A] [4jml_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JML
  • Community annotation for 4JML at PDBWiki (http://pdbwiki.org)

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