4JNM Discovery of Potent and Efficacious Urea-containing Nicotinamide Phosphoribosyltransferase (NAMPT) Inhibitors with Reduced CYP2C9 Inhibition Properties date 2013-03-15
authors Gunzner-Toste, J., Zhao, G., Bauer, P., Baumeister, T., Buckmelter, A.J., Caligiuri, M., Clodfelter, K.H., Fu, B., Han, B., Ho, Y., Kley, N., Liederer, B., Lin, J., Mukadam, S., Brien, T.O., Reynolds, D.J., Sharma, G., Skelton, N., Smith, C.C., Oh, A., Wang, W., Wang, Z., Xiao, Y., Yuen, P., Zak, M., Zhang, L., Zheng, X., Bair, K.W., Dragovich, P.S.
compound source
symmetry
R_factor
R_Free 0.2495
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.20
ligand 1LJ, EDO, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of potent and efficacious urea-containing nicotinamide phosphoribosyltransferase (NAMPT) inhibitors with reduced CYP2C9 inhibition properties., Gunzner-Toste J, Zhao G, Bauer P, Baumeister T, Buckmelter AJ, Caligiuri M, Clodfelter KH, Fu B, Han B, Ho YC, Kley N, Liang X, Liederer BM, Lin J, Mukadam S, O'Brien T, Oh A, Reynolds DJ, Sharma G, Skelton N, Smith CC, Sodhi J, Wang W, Wang Z, Xiao Y, Yuen PW, Zak M, Zhang L, Zheng X, Bair KW, Dragovich PS, Bioorg Med Chem Lett. 2013 Jun 15;23(12):3531-8. doi: 10.1016/j.bmcl.2013.04.040., Epub 2013 Apr 25. PMID:23668988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (4jnm.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 4JNM
  • CSU: Contacts of Structural Units for 4JNM
  • Structure Factors (656 Kb)
  • Retrieve 4JNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JNM from S2C, [Save to disk]
  • Re-refined 4jnm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JNM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JNM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jnm] [4jnm_B] [4jnm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4JNM
  • Community annotation for 4JNM at PDBWiki (http://pdbwiki.org)

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