4JOB Hydrolase date Mar 18, 2013
title Crystal Structure Of Human Lysophosphatidic Acid Phosphatase Complexed With L-(+)-Tartrate
authors J.Li
compound source
Molecule: Lysophosphatidic Acid Phosphatase Type 6
Chain: A
Synonym: Acid Phosphatase 6, Lysophosphatidic, Acid Phospha Protein 1, Pacpl1;
Ec: 3.1.3.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acp6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 21 21 21
R_factor 0.201 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.319 91.028 104.959 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand TLA enzyme Hydrolase E.C.3.1.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • acid phosphatase activity
  • lysophosphatidic acid phosph...


  • Primary referenceCrystal structures and biochemical studies of human lysophosphatidic acid phosphatase type 6., Li J, Dong Y, Lu X, Wang L, Peng W, Zhang XC, Rao Z, Protein Cell. 2013 Jun 26. PMID:23807634
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (4job.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 4JOB
  • CSU: Contacts of Structural Units for 4JOB
  • Structure Factors (236 Kb)
  • Retrieve 4JOB in mmCIF format [Save to disk]
  • Re-refined 4job structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4JOB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4JOB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4JOB, from MSDmotif at EBI
  • Fold representative 4job from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4job_A] [4job]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4JOB
  • Community annotation for 4JOB at PDBWiki (http://pdbwiki.org)

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