OCA Atlas for 4JQI

4JQI

Structure of active beta-arrestin1 bound to a G protein-coupled receptor phosphopeptide

date

2013-03-20

authors

Shukla, A.K., Manglik, A., Kruse, A.C., Xiao, K., Reis, R.I., Tseng, W.C., Staus, D.P., Hilger, D., Uysal, S., Huang, L.H., Paduch, M., Shukla, P.T., Koide, A., Koide, S., Weis, W.I., Kossiakoff, A.A., Kobilka, B.K., Lefkowitz, R.J.

compound

source

symmetry

R_factor

R_Free

0.2466

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

2.60

ligand

CL, EDO, PRO, SEP, TPO

enzyme

Gene
Ontology

Chain	Function	Process	Component
A	histone acetyltransferase ac... GTPase activator activity cysteine-type endopeptidase ...

Primary reference

Structure of active beta-arrestin-1 bound to a G-protein-coupled receptor phosphopeptide., Shukla AK, Manglik A, Kruse AC, Xiao K, Reis RI, Tseng WC, Staus DP, Hilger D, Uysal S, Huang LY, Paduch M, Tripathi-Shukla P, Koide A, Koide S, Weis WI, Kossiakoff AA, Kobilka BK, Lefkowitz RJ, Nature. 2013 May 2;497(7447):137-41. doi: 10.1038/nature12120. Epub 2013 Apr 21. PMID:23604254

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]

Biological Unit Coordinates (4jqi.pdb1.gz) 124 Kb

Biological Unit Coordinates (4jqi.pdb2.gz) 126 Kb

Biological Unit Coordinates (4jqi.pdb3.gz) 246 Kb

LPC: Ligand-Protein Contacts for 4JQI

CSU: Contacts of Structural Units for 4JQI

Structure Factors (280 Kb)

Retrieve 4JQI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4JQI from S2C, [Save to disk]

Re-refined 4jqi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4JQI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4JQI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 4JQI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4jqi_L] [4jqi] [4jqi_A] [4jqi_H] [4jqi_V]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 4JQI: [Arrestin_C] [IG_like] [IGv ] by SMART

Other resources with information on 4JQI

Community annotation for 4JQI at PDBWiki (http://pdbwiki.org)

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