4JQV HLA-B*18:01 in complex with Epstein-Barr virus BZLF1-derived peptide (residues 173-180) date 2013-03-20
authors Theodossis, A., Welland, A., Gras, S., Rossjohn, J.
compound source
symmetry
R_factor
R_Free 0.2142
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand ACT enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceHLA Peptide Length Preferences Control CD8+ T Cell Responses., Rist MJ, Theodossis A, Croft NP, Neller MA, Welland A, Chen Z, Sullivan LC, Burrows JM, Miles JJ, Brennan RM, Gras S, Khanna R, Brooks AG, McCluskey J, Purcell AW, Rossjohn J, Burrows SR, J Immunol. 2013 Jun 7. PMID:23749632
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (4jqv.pdb1.gz) 72 Kb
  • LPC: Ligand-Protein Contacts for 4JQV
  • CSU: Contacts of Structural Units for 4JQV
  • Structure Factors (533 Kb)
  • Retrieve 4JQV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JQV from S2C, [Save to disk]
  • Re-refined 4jqv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JQV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JQV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JQV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jqv_B] [4jqv] [4jqv_C] [4jqv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JQV: [IGc1 ] by SMART
    • Other resources with information on 4JQV
  • Community annotation for 4JQV at PDBWiki (http://pdbwiki.org)

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