4JSX structure of mTORDeltaN-mLST8-Torin2 complex date 2013-03-22
authors Pavletich, N.P., Yang, H.
compound source
symmetry
R_factor
R_Free 0.25682
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand 17G enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C
  • protein serine/threonine kin...


    • Primary referencemTOR kinase structure, mechanism and regulation., Yang H, Rudge DG, Koos JD, Vaidialingam B, Yang HJ, Pavletich NP, Nature. 2013 May 9;497(7448):217-23. doi: 10.1038/nature12122. Epub 2013 May 1. PMID:23636326
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk]
  • Biological Unit Coordinates (4jsx.pdb1.gz) 221 Kb
  • Biological Unit Coordinates (4jsx.pdb2.gz) 223 Kb
  • LPC: Ligand-Protein Contacts for 4JSX
  • CSU: Contacts of Structural Units for 4JSX
  • Structure Factors (441 Kb)
  • Retrieve 4JSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JSX from S2C, [Save to disk]
  • Re-refined 4jsx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JSX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JSX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jsx_A] [4jsx_D] [4jsx] [4jsx_C] [4jsx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4JSX: [FATC] [PI3Kc] [Rapamycin_bind] [WD40 ] by SMART
    • Other resources with information on 4JSX
  • Community annotation for 4JSX at PDBWiki (http://pdbwiki.org)

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