4JXT CID of human RPRD1A in complex with a phosphorylated peptide from RPB1-CTD date
authors Ni, Z., Xu, C., Tempel, W., Bakkouri, M.El., Loppnau, P., Guo, X., Bountra, C., Weigelt, J., Arrowsmith, C.H., Edwards, A.M., Min, J., Greenblatt, J.F., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2371
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand SEP, UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceRPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation., Ni Z, Xu C, Guo X, Hunter GO, Kuznetsova OV, Tempel W, Marcon E, Zhong G, Guo H, Kuo WH, Li J, Young P, Olsen JB, Wan C, Loppnau P, El Bakkouri M, Senisterra GA, He H, Huang H, Sidhu SS, Emili A, Murphy S, Mosley AL, Arrowsmith CH, Min J, Greenblatt JF, Nat Struct Mol Biol. 2014 Jul 6. doi: 10.1038/nsmb.2853. PMID:24997600
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (4jxt.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4JXT
  • CSU: Contacts of Structural Units for 4JXT
  • Structure Factors (970 Kb)
  • Retrieve 4JXT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4JXT from S2C, [Save to disk]
  • Re-refined 4jxt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4JXT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4JXT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4JXT, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4jxt_A] [4jxt] [4jxt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4JXT: [RPR ] by SMART
    • Other resources with information on 4JXT
  • Community annotation for 4JXT at PDBWiki (http://pdbwiki.org)

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