4K1B Structure of PIM-1 kinase bound to N-(5-(2-fluorophenyl)-1H-pyrrolo[2,3-b]pyridin-3-yl)-5-((((3R,4R)-3-fluoropiperidin-4-yl)methyl)amino)pyrazolo[1,5-a]pyrimidine-3-carboxamide date 2013-04-04
authors Murray, J.M., Wallweber, H., Steffek, M.
compound source
symmetry
R_factor
R_Free 0.1988
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.08
ligand 1OC, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of novel pyrazolo[1,5-a]pyrimidines as potent pan-Pim inhibitors by structure- and property-based drug design., Wang X, Magnuson S, Pastor R, Fan E, Hu H, Tsui V, Deng W, Murray J, Steffek M, Wallweber H, Moffat J, Drummond J, Chan G, Harstad E, Ebens AJ, Bioorg Med Chem Lett. 2013 Jun 1;23(11):3149-53. doi: 10.1016/j.bmcl.2013.04.020., Epub 2013 Apr 17. PMID:23623490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (4k1b.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4K1B
  • CSU: Contacts of Structural Units for 4K1B
  • Structure Factors (186 Kb)
  • Retrieve 4K1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K1B from S2C, [Save to disk]
  • Re-refined 4k1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K1B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K1B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k1b_A] [4k1b]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4K1B: [S_TKc ] by SMART
    • Other resources with information on 4K1B
  • Community annotation for 4K1B at PDBWiki (http://pdbwiki.org)

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