4K2H Unknown Function date Apr 09, 2013
title Crystal Structure Of C103a Mutant Of Dj-1 Superfamily Protei From Salmonella Typhimurium
authors I.A.Shumilin, E.Niedzialkowska, M.J.Domagalski, J.Stam, W.F.Ande W.Minor, Center For Structural Genomics Of Infectious Diseas (Csgid)
compound source
Molecule: Intracellular Proteaseamidase
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N
Engineered: Yes
Mutation: Yes
Organism_scientific: Salmonella Enterica Subsp. Enterica Se Typhimurium;
Organism_taxid: 99287
Strain: Lt2
Gene: Arah, Stm1931
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Codonplus(De3)-Ripl
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.172 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
179.662 113.751 175.710 90.00 109.33 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, N, K, E, B, H, M, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (837 Kb) [Save to disk]
  • Biological Unit Coordinates (4k2h.pdb1.gz) 123 Kb
  • Biological Unit Coordinates (4k2h.pdb2.gz) 124 Kb
  • Biological Unit Coordinates (4k2h.pdb3.gz) 123 Kb
  • Biological Unit Coordinates (4k2h.pdb4.gz) 123 Kb
  • Biological Unit Coordinates (4k2h.pdb5.gz) 125 Kb
  • Biological Unit Coordinates (4k2h.pdb6.gz) 125 Kb
  • Biological Unit Coordinates (4k2h.pdb7.gz) 123 Kb
  • LPC: Ligand-Protein Contacts for 4K2H
  • CSU: Contacts of Structural Units for 4K2H
  • Structure Factors (2805 Kb)
  • Retrieve 4K2H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K2H from S2C, [Save to disk]
  • Re-refined 4k2h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4K2H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4K2H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4K2H, from MSDmotif at EBI
  • Fold representative 4k2h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k2h_L] [4k2h_A] [4k2h_I] [4k2h_G] [4k2h_C] [4k2h_K] [4k2h_M] [4k2h_D] [4k2h] [4k2h_E] [4k2h_F] [4k2h_J] [4k2h_N] [4k2h_H] [4k2h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4K2H
  • Community annotation for 4K2H at PDBWiki (http://pdbwiki.org)

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