4K31 Crystal structure of apramycin bound to the leishmanial rRNA A-site date
authors Shalev, M., Kondo, J., Adir, N., Baasov, T.
compound source
symmetry
R_factor
R_Free 0.2644
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.42
ligand AM2 enzyme
Primary referenceIdentification of the molecular attributes required for aminoglycoside activity against Leishmania., Shalev M, Kondo J, Kopelyanskiy D, Jaffe CL, Adir N, Baasov T, Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13333-8. doi:, 10.1073/pnas.1307365110. Epub 2013 Jul 29. PMID:23898171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (4k31.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 4K31
  • CSU: Contacts of Structural Units for 4K31
  • Structure Factors (1008 Kb)
  • Retrieve 4K31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K31 from S2C, [Save to disk]
  • Re-refined 4k31 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K31
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K31, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k31] [4k31_C] [4k31_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4K31
  • Community annotation for 4K31 at PDBWiki (http://pdbwiki.org)

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