OCA Atlas for 4K4I

4K4I

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

1RY, ACT, CA, CAC

enzyme

Gene
Ontology

Chain	Function	Process	Component
I, E, M, A

Primary reference

Structural basis for the binding and incorporation of nucleotide analogs with L-stereochemistry by human DNA polymerase lambda, Vyas R, Zahurancik WJ, Suo Z, Proc Natl Acad Sci U S A. 2014 Jul 11. pii: 201401286. PMID:25015085

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (264 Kb) [Save to disk]

Biological Unit Coordinates (4k4i.pdb1.gz) 69 Kb

Biological Unit Coordinates (4k4i.pdb2.gz) 67 Kb

Biological Unit Coordinates (4k4i.pdb3.gz) 66 Kb

Biological Unit Coordinates (4k4i.pdb4.gz) 68 Kb

LPC: Ligand-Protein Contacts for 4K4I

CSU: Contacts of Structural Units for 4K4I

Structure Factors (6193 Kb)

Retrieve 4K4I in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4K4I from S2C, [Save to disk]

Re-refined 4k4i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4K4I in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4k4i] [4k4i_A] [4k4i_B] [4k4i_C] [4k4i_D] [4k4i_E] [4k4i_F] [4k4i_G] [4k4i_H] [4k4i_I] [4k4i_J] [4k4i_K] [4k4i_L] [4k4i_M] [4k4i_N] [4k4i_O] [4k4i_P]

SWISS-PROT database:

Domains found in 4K4I: [HhH1] [POLXc ] by SMART

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