4K4X Coxsackievirus B3 polymerase elongation complex (r2_form), rna date
authors Gong, P., Peersen, O.B.
compound source
symmetry
R_factor
R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.37
ligand GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, M, I, E


Primary referenceStructures of coxsackievirus, rhinovirus, and poliovirus polymerase elongation complexes solved by engineering RNA mediated crystal contacts., Gong P, Kortus MG, Nix JC, Davis RE, Peersen OB, PLoS One. 2013 May 8;8(5):e60272. doi: 10.1371/journal.pone.0060272. Print 2013. PMID:23667424
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (366 Kb) [Save to disk]
  • Biological Unit Coordinates (4k4x.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (4k4x.pdb2.gz) 93 Kb
  • Biological Unit Coordinates (4k4x.pdb3.gz) 93 Kb
  • Biological Unit Coordinates (4k4x.pdb4.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 4K4X
  • CSU: Contacts of Structural Units for 4K4X
  • Structure Factors (805 Kb)
  • Retrieve 4K4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K4X from S2C, [Save to disk]
  • Re-refined 4k4x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4K4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4K4X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K4X, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k4x_J] [4k4x_O] [4k4x_M] [4k4x_G] [4k4x_A] [4k4x_D] [4k4x_F] [4k4x_L] [4k4x_H] [4k4x_B] [4k4x_C] [4k4x_I] [4k4x_E] [4k4x_K] [4k4x_N] [4k4x] [4k4x_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4K4X
  • Community annotation for 4K4X at PDBWiki (http://pdbwiki.org)

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