4K88 Crystal structure of human prolyl-tRNA synthetase (halofuginone bound form) date
authors Hwang, K.Y., Son, J.H., Lee, E.H.
compound source
symmetry
R_factor
R_Free 0.2757
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.62
ligand HFG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4k88.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 4K88
  • CSU: Contacts of Structural Units for 4K88
  • Structure Factors (199 Kb)
  • Retrieve 4K88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K88 from S2C, [Save to disk]
  • Re-refined 4k88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4K88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4K88
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4K88, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k88_A] [4k88]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4K88: [ProRS-C_1 ] by SMART
  • Other resources with information on 4K88
  • Community annotation for 4K88 at PDBWiki (http://pdbwiki.org)

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