4K8R Immune System date Apr 18, 2013
title An Antibody Against The C-Terminal Domain Of Pcsk9 Lowers Ld Cholesterol Levels In Vivo
authors F.Schiele, H.Nar
compound source
Molecule: Proprotein Convertase Subtilisinkexin Type 9
Chain: A
Fragment: Unp Residues 61-152
Synonym: Neural Apoptosis-Regulated Convertase 1, Narc-1, P Convertase 9, Pc9, Subtilisinkexin-Like Protease Pc9;
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Narc1, Pcsk9, Psec0052
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Proprotein Convertase Subtilisinkexin Type 9
Chain: B
Fragment: Unp Residues 153-692
Synonym: Neural Apoptosis-Regulated Convertase 1, Narc-1, P Convertase 9, Pc9, Subtilisinkexin-Like Protease Pc9;
Ec: 3.4.21.-
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Narc1, Pcsk9, Psec0052
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab1, Light Chain
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab1, Heavy Chain
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab3h42, Heavy Chain
Chain: H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Fab3h42, Light Chain
Chain: L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.167 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
262.190 138.650 69.540 90.00 102.87 90.00
method X-Ray Diffractionresolution 3.22 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceAn Antibody against the C-Terminal Domain of PCSK9 Lowers LDL Cholesterol Levels InVivo., Schiele F, Park J, Redemann N, Luippold G, Nar H, J Mol Biol. 2013 Nov 16. pii: S0022-2836(13)00722-5. doi:, 10.1016/j.jmb.2013.11.011. PMID:24252255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (480 Kb) [Save to disk]
  • Biological Unit Coordinates (4k8r.pdb1.gz) 193 Kb
  • Biological Unit Coordinates (4k8r.pdb2.gz) 150 Kb
  • Biological Unit Coordinates (4k8r.pdb3.gz) 141 Kb
  • CSU: Contacts of Structural Units for 4K8R
  • Structure Factors (779 Kb)
  • Retrieve 4K8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4K8R from S2C, [Save to disk]
  • Re-refined 4k8r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4K8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4K8R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4K8R, from MSDmotif at EBI
  • Fold representative 4k8r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4k8r_D] [4k8r_L] [4k8r_A] [4k8r] [4k8r_H] [4k8r_C] [4k8r_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4K8R: [IG_like] [IGv ] by SMART
  • Other resources with information on 4K8R
  • Community annotation for 4K8R at PDBWiki (http://pdbwiki.org)

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