4KAZ Crystal structure of RNase T in complex with a Y structured DNA date 2013-04-23
authors Hsiao, Y.Y., Yuan, H.S.
compound source
symmetry
R_factor
R_Free 0.2185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • nuclease activity
  • exonuclease activity
  • ribonuclease activity
  • 3'-5' exonuclease activity
  • exoribonuclease activity, pr...


  • Primary referenceStructural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways., Hsiao YY, Fang WH, Lee CC, Chen YP, Yuan HS, PLoS Biol. 2014 Mar 4;12(3):e1001803. doi: 10.1371/journal.pbio.1001803., eCollection 2014 Mar. PMID:24594808
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (4kaz.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4KAZ
  • CSU: Contacts of Structural Units for 4KAZ
  • Structure Factors (152 Kb)
  • Retrieve 4KAZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KAZ from S2C, [Save to disk]
  • Re-refined 4kaz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KAZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KAZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KAZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kaz] [4kaz_B] [4kaz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KAZ: [EXOIII ] by SMART
  • Other resources with information on 4KAZ
  • Community annotation for 4KAZ at PDBWiki (http://pdbwiki.org)

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