4KBO Signaling Protein date Apr 23, 2013
title Crystal Structure Of The Human Mortalin (Grp75) Atpase Domai Apo Form
authors J.Amick, R.C.Page, J.C.Nix, S.Misra
compound source
Molecule: Stress-70 Protein, Mitochondrial
Chain: A
Fragment: Nucleotide Binding Domain
Synonym: 75 Kda Glucose-Regulated Protein, Grp-75, Heat Sho Protein 9, Mortalin, Mot, Peptide-Binding Protein 74, Pbp74
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grp75, Hspa9, Hspa9b
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgst2
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.197 67.812 120.769 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NA enzyme
Primary referenceCrystal structure of the nucleotide-binding domain of mortalin, the mitochondrial Hsp70 chaperone., Amick J, Schlanger SE, Wachnowsky C, Moseng MA, Emerson CC, Dare M, Luo WI, Ithychanda SS, Nix JC, Cowan JA, Page RC, Misra S, Protein Sci. 2014 Mar 29. doi: 10.1002/pro.2466. PMID:24687350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (4kbo.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4KBO
  • CSU: Contacts of Structural Units for 4KBO
  • Structure Factors (63 Kb)
  • Retrieve 4KBO in mmCIF format [Save to disk]
  • Re-refined 4kbo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KBO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KBO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4KBO, from MSDmotif at EBI
  • Fold representative 4kbo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kbo_A] [4kbo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4KBO
  • Community annotation for 4KBO at PDBWiki (http://pdbwiki.org)

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