4KC1 Structure of the blood group glycosyltransferase AAglyB in complex with a pyridine inhibitor as a neutral pyrophosphate surrogate date
authors Cuesta-Seijo, J.A., Wang, S., Lafont, D., Vidal, S., Palcic, M.M.
compound source
symmetry
R_factor
R_Free 0.1805
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.50
ligand BHE, MN, WS1 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesign of glycosyltransferase inhibitors: pyridine as a pyrophosphate surrogate., Wang S, Cuesta-Seijo JA, Lafont D, Palcic MM, Vidal S, Chemistry. 2013 Nov 4;19(45):15346-57. doi: 10.1002/chem.201301871. Epub 2013 Sep, 23. PMID:24108680
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (4kc1.pdb1.gz) 235 Kb
  • LPC: Ligand-Protein Contacts for 4KC1
  • CSU: Contacts of Structural Units for 4KC1
  • Structure Factors (396 Kb)
  • Retrieve 4KC1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KC1 from S2C, [Save to disk]
  • Re-refined 4kc1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KC1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KC1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KC1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1t4kc1, region C:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1e4kc1, region C:1-86 [Jmol] [rasmolscript] [script source]
        - Domain d1q4kc1, region C:372-494 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kc1_A] [4kc1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KC1
  • Community annotation for 4KC1 at PDBWiki (http://pdbwiki.org)

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