4KDV Crystal structure of a bacterial immunoglobulin-like domain from the M. primoryensis ice-binding adhesin date 2013-04-25
authors Guo, S., Garnham, C.P., Karunan, S.P., Campbell, R.L., Allingham, J.S., Davies, P.L.
compound source
symmetry
R_factor
R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.42
ligand CA enzyme
Primary referenceRole of Ca in folding the tandem beta-sandwich extender domains of a bacterial ice-binding adhesin., Guo S, Garnham CP, Karunan SP, Campbell RL, Allingham JS, Davies PL, FEBS J. 2013 Sep 11. doi: 10.1111/febs.12518. PMID:24024640
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (4kdv.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 4KDV
  • CSU: Contacts of Structural Units for 4KDV
  • Structure Factors (135 Kb)
  • Retrieve 4KDV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KDV from S2C, [Save to disk]
  • Re-refined 4kdv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KDV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KDV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KDV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kdv_A] [4kdv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KDV
  • Community annotation for 4KDV at PDBWiki (http://pdbwiki.org)

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