4KF6	Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 8:0 Ceramide-1-Phosphate (8:0-C1P)	date	2013-04-26
authors	Simanshu, D.K., Brown, R.E., Patel, D.J.
compound		source
symmetry		R_factor R_Free 0.2646
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.19
ligand	1T9	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Non-vesicular trafficking by a ceramide-1-phosphate transfer protein regulates eicosanoids., Simanshu DK, Kamlekar RK, Wijesinghe DS, Zou X, Zhai X, Mishra SK, Molotkovsky JG, Malinina L, Hinchcliffe EH, Chalfant CE, Brown RE, Patel DJ, Nature. 2013 Aug 22;500(7463):463-7. doi: 10.1038/nature12332. Epub 2013 Jul 17. PMID:23863933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (418 Kb) [Save to disk] Biological Unit Coordinates (4kf6.pdb1.gz) 71 Kb Biological Unit Coordinates (4kf6.pdb2.gz) 71 Kb Biological Unit Coordinates (4kf6.pdb3.gz) 71 Kb Biological Unit Coordinates (4kf6.pdb4.gz) 72 Kb Biological Unit Coordinates (4kf6.pdb5.gz) 71 Kb Biological Unit Coordinates (4kf6.pdb6.gz) 71 Kb LPC: Ligand-Protein Contacts for 4KF6 CSU: Contacts of Structural Units for 4KF6 Structure Factors (528 Kb) Retrieve 4KF6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4KF6 from S2C, [Save to disk] Re-refined 4kf6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KF6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4KF6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4KF6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4kf6_E] [4kf6_A] [4kf6_F] [4kf6_D] [4kf6_C] [4kf6] [4kf6_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4KF6

Community annotation for 4KF6 at PDBWiki (http://pdbwiki.org)

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