4KFZ Crystal structure of LMO2 and anti-LMO2 VH complex date 2013-04-28
authors Sewell, H., Tanaka, T., Omari, K.El., Cruz-Migoni, A., Mancini, E.J., Fuentes-Fernandez, N., Chambers, J., Rabbitts, T.H.
compound source
symmetry
R_factor
R_Free 0.25828
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceConformational flexibility of the oncogenic protein LMO2 primes the formation of the multi-protein transcription complex., Sewell H, Tanaka T, Omari KE, Mancini EJ, Cruz A, Fernandez-Fuentes N, Chambers J, Rabbitts TH, Sci Rep. 2014 Jan 10;4:3643. doi: 10.1038/srep03643. PMID:24407558
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (186 Kb) [Save to disk]
  • Biological Unit Coordinates (4kfz.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (4kfz.pdb2.gz) 93 Kb
  • Biological Unit Coordinates (4kfz.pdb3.gz) 518 Kb
  • Biological Unit Coordinates (4kfz.pdb4.gz) 545 Kb
  • LPC: Ligand-Protein Contacts for 4KFZ
  • CSU: Contacts of Structural Units for 4KFZ
  • Structure Factors (258 Kb)
  • Retrieve 4KFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KFZ from S2C, [Save to disk]
  • Re-refined 4kfz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KFZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KFZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kfz_B] [4kfz_A] [4kfz_D] [4kfz] [4kfz_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KFZ: [IGv] [LIM ] by SMART
  • Other resources with information on 4KFZ
  • Community annotation for 4KFZ at PDBWiki (http://pdbwiki.org)

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