4KHP Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin date
authors Tourigny, D.S., Fernandez, I.S., Kelley, A.C., Ramakrishnan, V.
compound source
symmetry
R_factor
R_Free 0.2262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.10
ligand MG, PAR, PCY enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


Primary referenceCrystal Structure of a Bioactive Pactamycin Analog Bound to the 30S Ribosomal Subunit., Tourigny DS, Fernandez IS, Kelley AC, Vakiti RR, Chattopadhyay AK, Dorich S, Hanessian S, Ramakrishnan V, J Mol Biol. 2013 May 20. pii: S0022-2836(13)00303-3. doi:, 10.1016/j.jmb.2013.05.004. PMID:23702293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1056 Kb) [Save to disk]
  • Biological Unit Coordinates (4khp.pdb1.gz) 1042 Kb
  • LPC: Ligand-Protein Contacts for 4KHP
  • CSU: Contacts of Structural Units for 4KHP
  • Structure Factors (3866 Kb)
  • Retrieve 4KHP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KHP from S2C, [Save to disk]
  • Re-refined 4khp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KHP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KHP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KHP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4khp_I] [4khp_X] [4khp_H] [4khp_F] [4khp_G] [4khp_S] [4khp_B] [4khp_D] [4khp_L] [4khp_J] [4khp_C] [4khp_P] [4khp_R] [4khp] [4khp_Q] [4khp_U] [4khp_E] [4khp_N] [4khp_T] [4khp_O] [4khp_K] [4khp_A] [4khp_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KHP: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 4KHP
  • Community annotation for 4KHP at PDBWiki (http://pdbwiki.org)

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