4KI4 Ternary complex of rb69 mutant L415F with ribonucleotides at 0 and -1 position date 2013-05-01
authors Clausen, A.R., Pedersen, L.C.
compound source
symmetry
R_factor
R_Free 0.2206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.45
ligand CA, GOL, NA, TTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Primary referenceStructure-function analysis of ribonucleotide bypass by B family DNA replicases., Clausen AR, Murray MS, Passer AR, Pedersen LC, Kunkel TA, Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16802-7. doi:, 10.1073/pnas.1309119110. Epub 2013 Sep 30. PMID:24082122
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk]
  • Biological Unit Coordinates (4ki4.pdb1.gz) 331 Kb
  • LPC: Ligand-Protein Contacts for 4KI4
  • CSU: Contacts of Structural Units for 4KI4
  • Structure Factors (314 Kb)
  • Retrieve 4KI4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KI4 from S2C, [Save to disk]
  • Re-refined 4ki4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KI4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KI4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KI4, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ki4_T] [4ki4_A] [4ki4_P] [4ki4]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KI4: [POLBc ] by SMART
    • Other resources with information on 4KI4
  • Community annotation for 4KI4 at PDBWiki (http://pdbwiki.org)

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