4KI6 Ternary complex of rb69 mutant l415f with ribonucleotides at -1 and -2 position date 2013-05-01
authors Clausen, A.R., Pedersen, L.C.
compound source
symmetry
R_factor
R_Free 0.2326
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
ligand CA, NA, PO4, TTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


    • Primary referenceStructure-function analysis of ribonucleotide bypass by B family DNA replicases., Clausen AR, Murray MS, Passer AR, Pedersen LC, Kunkel TA, Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):16802-7. doi:, 10.1073/pnas.1309119110. Epub 2013 Sep 30. PMID:24082122
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (334 Kb) [Save to disk]
  • Biological Unit Coordinates (4ki6.pdb1.gz) 325 Kb
  • LPC: Ligand-Protein Contacts for 4KI6
  • CSU: Contacts of Structural Units for 4KI6
  • Structure Factors (319 Kb)
  • Retrieve 4KI6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KI6 from S2C, [Save to disk]
  • Re-refined 4ki6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KI6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KI6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KI6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ki6_T] [4ki6] [4ki6_P] [4ki6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KI6: [POLBc ] by SMART
    • Other resources with information on 4KI6
  • Community annotation for 4KI6 at PDBWiki (http://pdbwiki.org)

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