4KI7 Design and structural analysis of aromatic inhibitors of type II dehydroquinase from Mycobacterium tuberculosis - compound 41c [3-hydroxy-5-(3-nitrophenoxy)benzoic acid] date
authors Dias, M.V.B., Howard, N.G., Blundell, T.L., Abell, C.
compound source
symmetry
R_factor
R_Free 0.2776
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.80
ligand 1R2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceDesign and Structural Analysis of Aromatic Inhibitors of Type II Dehydroquinase from Mycobacterium tuberculosis., Howard NI, Dias MV, Peyrot F, Chen L, Schmidt MF, Blundell TL, Abell C, ChemMedChem. 2015 Jan;10(1):116-33. doi: 10.1002/cmdc.201402298. Epub 2014 Sep, 18. PMID:25234229
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (540 Kb) [Save to disk]
  • Biological Unit Coordinates (4ki7.pdb1.gz) 268 Kb
  • Biological Unit Coordinates (4ki7.pdb2.gz) 270 Kb
  • Biological Unit Coordinates (4ki7.pdb3.gz) 529 Kb
  • LPC: Ligand-Protein Contacts for 4KI7
  • CSU: Contacts of Structural Units for 4KI7
  • Structure Factors (1498 Kb)
  • Retrieve 4KI7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KI7 from S2C, [Save to disk]
  • Re-refined 4ki7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KI7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KI7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KI7, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ki7_E] [4ki7_S] [4ki7_D] [4ki7_T] [4ki7_R] [4ki7_F] [4ki7_A] [4ki7_W] [4ki7_X] [4ki7_V] [4ki7_L] [4ki7_N] [4ki7_H] [4ki7_B] [4ki7] [4ki7_C] [4ki7_O] [4ki7_K] [4ki7_P] [4ki7_G] [4ki7_I] [4ki7_Q] [4ki7_M] [4ki7_U] [4ki7_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KI7
  • Community annotation for 4KI7 at PDBWiki (http://pdbwiki.org)

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