4KMD Crystal structure of Sufud60-Gli1p date
authors Zhang, Y., Qi, X., Zhang, Z., Wu, G.
compound source
symmetry
R_factor
R_Free 0.2221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand DTT, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insight into the mutual recognition and regulation between Suppressor of Fused and Gli/Ci., Zhang Y, Fu L, Qi X, Zhang Z, Xia Y, Jia J, Jiang J, Zhao Y, Wu G, Nat Commun. 2013;4:2608. doi: 10.1038/ncomms3608. PMID:24217340
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk]
  • Biological Unit Coordinates (4kmd.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (4kmd.pdb2.gz) 257 Kb
  • LPC: Ligand-Protein Contacts for 4KMD
  • CSU: Contacts of Structural Units for 4KMD
  • Structure Factors (706 Kb)
  • Retrieve 4KMD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KMD from S2C, [Save to disk]
  • Re-refined 4kmd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KMD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KMD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KMD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kmd_B] [4kmd_A] [4kmd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4KMD
  • Community annotation for 4KMD at PDBWiki (http://pdbwiki.org)

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