4KNV The crystal structure of APO HUMAN HDHD4 FROM SE-MAD date 2013-05-10
authors Klei, H.E.
compound source
symmetry
R_factor
R_Free 0.2458
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.99
ligand MG, MSE, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • N-acylneuraminate-9-phosphat...


    • Primary referenceDesign, synthesis, functional and structural characterization of an inhibitor of N-acetylneuraminate-9-phosphate phosphatase: Observation of extensive dynamics in an enzyme/inhibitor complex., Kim SH, Constantine KL, Duke GJ, Goldfarb V, Hunt JT, Johnson S, Kish K, Klei HE, McDonnell PA, Metzler WJ, Mueller L, Poss MA, Fairchild CR, Bhide RS, Bioorg Med Chem Lett. 2013 Jul 15;23(14):4107-11. doi:, 10.1016/j.bmcl.2013.05.052. Epub 2013 May 23. PMID:23747226
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (4knv.pdb1.gz) 43 Kb
  • Biological Unit Coordinates (4knv.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4KNV
  • CSU: Contacts of Structural Units for 4KNV
  • Structure Factors (3715 Kb)
  • Retrieve 4KNV in mmCIF format [Save to disk]
  • Re-refined 4knv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KNV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KNV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KNV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4knv] [4knv_A] [4knv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KNV
  • Community annotation for 4KNV at PDBWiki (http://pdbwiki.org)

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