4KNY Crystal structure of the response regulator KdpE complexed to DNA in an active-like conformation date 2013-05-10
authors Kumar, S., Narayanan, A., Yernool, D.A.
compound source
symmetry
R_factor
R_Free 0.2483
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.94
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • bacterial-type RNA polymeras...


    • Primary referenceAn asymmetric heterodomain interface stabilizes a response regulator-DNA complex., Narayanan A, Kumar S, Evrard AN, Paul LN, Yernool DA, Nat Commun. 2014 Feb 14;5:3282. doi: 10.1038/ncomms4282. PMID:24526190
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (4kny.pdb1.gz) 91 Kb
  • CSU: Contacts of Structural Units for 4KNY
  • Structure Factors (243 Kb)
  • Retrieve 4KNY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KNY from S2C, [Save to disk]
  • Re-refined 4kny structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KNY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KNY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KNY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kny] [4kny_B] [4kny_Y] [4kny_A] [4kny_Z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KNY: [REC] [Trans_reg_C ] by SMART
    • Other resources with information on 4KNY
  • Community annotation for 4KNY at PDBWiki (http://pdbwiki.org)

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