4KR3 Glycyl-tRNA synthetase mutant E71G in complex with tRNA-Gly date
authors Qin, X., Hao, Z., Tian, Q., Zhang, Z., Zhou, C., Xie, W.
compound source
symmetry
R_factor
R_Free 0.2921
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.23
ligand ANP, GLY, GTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCocrystal Structures of Glycyl-tRNA Synthetase in Complex with tRNA Suggest Multiple Conformational States in Glycylation., Qin X, Hao Z, Tian Q, Zhang Z, Zhou C, Xie W, J Biol Chem. 2014 Jul 18;289(29):20359-69. doi: 10.1074/jbc.M114.557249. Epub, 2014 Jun 4. PMID:24898252
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (4kr3.pdb1.gz) 428 Kb
  • LPC: Ligand-Protein Contacts for 4KR3
  • CSU: Contacts of Structural Units for 4KR3
  • Structure Factors (301 Kb)
  • Retrieve 4KR3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KR3 from S2C, [Save to disk]
  • Re-refined 4kr3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KR3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KR3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KR3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kr3_C] [4kr3_A] [4kr3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4KR3
  • Community annotation for 4KR3 at PDBWiki (http://pdbwiki.org)

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