4KRV Crystal structure of catalytic domain of bovine beta1,4-galactosyltransferase mutant M344H-GalT1 complex with 6-sulfo-GlcNAc date
authors Ramakrishnan, B., Qasba, P.K.
compound source
symmetry
R_factor
R_Free 0.2495
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand MN, NGS, SO4, UDH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInvestigations on beta1,4-galactosyltransferase I using 6-sulfo-GlcNAc as an acceptor sugar substrate., Ramakrishnan B, Moncrief AJ, Davis TA, Holland LA, Qasba PK, Glycoconj J. 2013 Aug 13. PMID:23942731
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (4krv.pdb1.gz) 48 Kb
  • Biological Unit Coordinates (4krv.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4KRV
  • CSU: Contacts of Structural Units for 4KRV
  • Structure Factors (318 Kb)
  • Retrieve 4KRV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KRV from S2C, [Save to disk]
  • Re-refined 4krv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KRV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KRV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KRV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4krv_A] [4krv_B] [4krv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KRV
  • Community annotation for 4KRV at PDBWiki (http://pdbwiki.org)

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