4KS8 PAK6 kinase domain in complex with sunitinib date 2013-05-17
authors Gao, J., Boggon, T.J.
compound source
symmetry
R_factor
R_Free 0.26099
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand B49, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate and Inhibitor Specificity of the Type II p21-Activated Kinase, PAK6., Gao J, Ha BH, Lou HJ, Morse EM, Zhang R, Calderwood DA, Turk BE, Boggon TJ, PLoS One. 2013 Oct 28;8(10):e77818. doi: 10.1371/journal.pone.0077818. PMID:24204982
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4ks8.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 4KS8
  • CSU: Contacts of Structural Units for 4KS8
  • Structure Factors (486 Kb)
  • Retrieve 4KS8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KS8 from S2C, [Save to disk]
  • Re-refined 4ks8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KS8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KS8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KS8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ks8_A] [4ks8]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KS8: [S_TKc ] by SMART
    • Other resources with information on 4KS8
  • Community annotation for 4KS8 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science