4KSP Crystal Structure of Human B-raf bound to a DFG-out Inhibitor TAK-632 date
authors Yano, J.K., Masanori, O.
compound source
symmetry
R_factor
R_Free 0.2417
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.93
ligand 1SU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of a Selective Kinase Inhibitor (TAK-632) Targeting Pan-RAF Inhibition: Design, Synthesis, and Biological Evaluation of C-7-Substituted 1,3-Benzothiazole Derivatives., Okaniwa M, Hirose M, Arita T, Yabuki M, Nakamura A, Takagi T, Kawamoto T, Uchiyama N, Sumita A, Tsutsumi S, Tottori T, Inui Y, Sang BC, Yano J, Aertgeerts K, Yoshida S, Ishikawa T, J Med Chem. 2013 Aug 22;56(16):6478-94. doi: 10.1021/jm400778d. Epub 2013 Aug 1. PMID:23906342
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (4ksp.pdb1.gz) 174 Kb
  • Biological Unit Coordinates (4ksp.pdb2.gz) 89 Kb
  • Biological Unit Coordinates (4ksp.pdb3.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 4KSP
  • CSU: Contacts of Structural Units for 4KSP
  • Structure Factors (452 Kb)
  • Retrieve 4KSP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KSP from S2C, [Save to disk]
  • Re-refined 4ksp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KSP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KSP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KSP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ksp_B] [4ksp] [4ksp_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KSP: [STYKc ] by SMART
    • Other resources with information on 4KSP
  • Community annotation for 4KSP at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science