4KV5 scFv GC1009 in complex with TGF-beta1. date
authors Wei, R., Moulin, A.G., Mathieu, M.
compound source
symmetry
R_factor
R_Free 0.3003
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of a pan-specific antagonist antibody complexed to different isoforms of TGFbeta reveal structural plasticity of antibody-antigen interactions., Moulin A, Mathieu M, Lawrence C, Bigelow R, Levine M, Hamel C, Marquette JP, Le Parc J, Loux C, Ferrari P, Capdevila C, Dumas J, Dumas B, Rak A, Bird J, Qiu H, Pan CQ, Edmunds T, Wei RR, Protein Sci. 2014 Sep 10. doi: 10.1002/pro.2548. PMID:25209176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (221 Kb) [Save to disk]
  • Biological Unit Coordinates (4kv5.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (4kv5.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (4kv5.pdb3.gz) 39 Kb
  • Biological Unit Coordinates (4kv5.pdb4.gz) 39 Kb
  • Biological Unit Coordinates (4kv5.pdb5.gz) 39 Kb
  • Biological Unit Coordinates (4kv5.pdb6.gz) 39 Kb
  • CSU: Contacts of Structural Units for 4KV5
  • Structure Factors (265 Kb)
  • Retrieve 4KV5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KV5 from S2C, [Save to disk]
  • Re-refined 4kv5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KV5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KV5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KV5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kv5_F] [4kv5_B] [4kv5] [4kv5_G] [4kv5_A] [4kv5_E] [4kv5_H] [4kv5_K] [4kv5_D] [4kv5_C] [4kv5_L] [4kv5_J] [4kv5_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KV5: [IGv] [TGFB ] by SMART
    • Other resources with information on 4KV5
  • Community annotation for 4KV5 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science