4KXV Human transketolase in covalent complex with donor ketose D-xylulose-5-phosphate, crystal 1 date
authors Neumann, P., Luedtke, S., Ficner, R., Tittmann, K.
compound source
symmetry
R_factor
R_Free 0.1144
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 0.97
ligand CA, DX5, EDO, TDP, TPP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate., Ludtke S, Neumann P, Erixon KM, Leeper F, Kluger R, Ficner R, Tittmann K, Nat Chem. 2013 Sep;5(9):762-7. doi: 10.1038/nchem.1728. Epub 2013 Aug 18. PMID:23965678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (257 Kb) [Save to disk]
  • Biological Unit Coordinates (4kxv.pdb1.gz) 488 Kb
  • LPC: Ligand-Protein Contacts for 4KXV
  • CSU: Contacts of Structural Units for 4KXV
  • Structure Factors (3357 Kb)
  • Retrieve 4KXV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KXV from S2C, [Save to disk]
  • Re-refined 4kxv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4KXV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4KXV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KXV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kxv] [4kxv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4KXV: [Transket_pyr ] by SMART
  • Other resources with information on 4KXV
  • Community annotation for 4KXV at PDBWiki (http://pdbwiki.org)

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