4KZ1 Crystal structure of the soluble domain of VirB8 from Bartonella grahamii date
authors SSGCID, Seattle.Structural.Genomics.Center.for.Infectious.Disease.
compound source
symmetry
R_factor
R_Free 0.2491
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.55
Gene BGR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems., Gillespie JJ, Phan IQ, Scheib H, Subramanian S, Edwards TE, Lehman SS, Piitulainen H, Sayeedur Rahman M, Rennoll-Bankert KE, Staker BL, Taira S, Stacy R, Myler PJ, Azad AF, Pulliainen AT, MBio. 2015 Dec 8;6(6). pii: e01867-15. doi: 10.1128/mBio.01867-15. PMID:26646013
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4kz1.pdb1.gz) 88 Kb
  • CSU: Contacts of Structural Units for 4KZ1
  • Structure Factors (114 Kb)
  • Retrieve 4KZ1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KZ1 from S2C, [Save to disk]
  • Re-refined 4kz1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KZ1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KZ1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KZ1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kz1] [4kz1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4KZ1
  • Community annotation for 4KZ1 at PDBWiki (http://pdbwiki.org)

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