4KZX Rabbit 40S ribosomal subunit in complex with eIF1. date 2013-05-30
authors Lomakin, I.B., Steitz, T.A.
compound source
symmetry
R_factor
R_Free 0.3471
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 7.81
Gene
Ontology
ChainFunctionProcessComponent
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Primary referenceThe initiation of mammalian protein synthesis and mRNA scanning mechanism., Lomakin IB, Steitz TA, Nature. 2013 Jul 21. doi: 10.1038/nature12355. PMID:23873042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3336 Kb) [Save to disk]
  • Biological Unit Coordinates (4kzx.pdb1.gz) 3319 Kb
  • CSU: Contacts of Structural Units for 4KZX
  • Structure Factors (222 Kb)
  • Retrieve 4KZX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4KZX from S2C, [Save to disk]
  • Re-refined 4kzx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4KZX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4KZX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4KZX, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4kzx_Y] [4kzx_d] [4kzx_F] [4kzx] [4kzx_g] [4kzx_H] [4kzx_C] [4kzx_E] [4kzx_V] [4kzx_I] [4kzx_S] [4kzx_L] [4kzx_b] [4kzx_X] [4kzx_A] [4kzx_D] [4kzx_f] [4kzx_i] [4kzx_U] [4kzx_N] [4kzx_P] [4kzx_e] [4kzx_c] [4kzx_Z] [4kzx_G] [4kzx_J] [4kzx_B] [4kzx_Q] [4kzx_T] [4kzx_a] [4kzx_M] [4kzx_R] [4kzx_l] [4kzx_K] [4kzx_O] [4kzx_W]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4KZX: [KH] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [UBQ] [WD40 ] by SMART
    • Other resources with information on 4KZX
  • Community annotation for 4KZX at PDBWiki (http://pdbwiki.org)

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