OCA Atlas for 4KZX

4KZX

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
A
B
C
D
E
F
G
H
I
J
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
Z
a
b
c
d
e
f
l

Primary reference

The initiation of mammalian protein synthesis and mRNA scanning mechanism., Lomakin IB, Steitz TA, Nature. 2013 Jul 21. doi: 10.1038/nature12355. PMID:23873042

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3336 Kb) [Save to disk]

Biological Unit Coordinates (4kzx.pdb1.gz) 3319 Kb

CSU: Contacts of Structural Units for 4KZX

Structure Factors (222 Kb)

Retrieve 4KZX in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4KZX from S2C, [Save to disk]

Re-refined 4kzx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4KZX in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4kzx] [4kzx_A] [4kzx_B] [4kzx_C] [4kzx_D] [4kzx_E] [4kzx_F] [4kzx_G] [4kzx_H] [4kzx_I] [4kzx_J] [4kzx_K] [4kzx_L] [4kzx_M] [4kzx_N] [4kzx_O] [4kzx_P] [4kzx_Q] [4kzx_R] [4kzx_S] [4kzx_T] [4kzx_U] [4kzx_V] [4kzx_W] [4kzx_X] [4kzx_Y] [4kzx_Z] [4kzx_a] [4kzx_b] [4kzx_c] [4kzx_d] [4kzx_e] [4kzx_f] [4kzx_g] [4kzx_i] [4kzx_l]

SWISS-PROT database:

Domains found in 4KZX: [KH] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [UBQ] [WD40 ] by SMART

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