4L0D Lyase date May 31, 2013
title Crystal Structure Of Delta516-525 Human Cystathionine Beta-S Containing C-Terminal 6xhis-Tag
authors J.Ereno, T.Majtan, I.Oyenarte, J.P.Kraus, L.A.Martinez-Cruz
compound source
Molecule: Cystathionine Beta-Synthase
Chain: A, B
Synonym: Beta-Thionase, Serine Sulfhydrase
Ec: 4.2.1.22
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbs
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 2 2 2
R_factor 0.240 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.365 136.203 169.307 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.97 Å
ligand HEM, PLP enzyme Lyase E.C.4.2.1.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nitrite reductase (NO-formin...


  • Primary referenceStructural basis of regulation and oligomerization of human cystathionine beta-synthase, the central enzyme of transsulfuration., Ereno-Orbea J, Majtan T, Oyenarte I, Kraus JP, Martinez-Cruz LA, Proc Natl Acad Sci U S A. 2013 Sep 16. PMID:24043838
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (4l0d.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 4L0D
  • CSU: Contacts of Structural Units for 4L0D
  • Structure Factors (1062 Kb)
  • Retrieve 4L0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L0D from S2C, [Save to disk]
  • Re-refined 4l0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L0D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4L0D, from MSDmotif at EBI
  • Fold representative 4l0d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l0d] [4l0d_B] [4l0d_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L0D: [CBS ] by SMART
  • Other resources with information on 4L0D
  • Community annotation for 4L0D at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science