4L1J Three dimensional structure of mutant D143A of human HD domain-containing protein 2, Northeast Structural Genomics Consortium (NESG) Target HR6723 date
authors Kuzin, A., Su, M., Yakunin, A., Beloglazova, O., Seetharaman, J., Maglaqui, M., Xiao, R., Lee, D., Brown, G., Flick, R., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., NESG, Northeast.Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2014
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.82
ligand MSE, PE4, PEG, SEP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • 5'-deoxynucleotidase activit...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (4l1j.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 4L1J
  • CSU: Contacts of Structural Units for 4L1J
  • Structure Factors (511 Kb)
  • Retrieve 4L1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L1J from S2C, [Save to disk]
  • Re-refined 4l1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L1J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l1j_A] [4l1j] [4l1j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L1J: [HDc ] by SMART
  • Other resources with information on 4L1J
  • Community annotation for 4L1J at PDBWiki (http://pdbwiki.org)

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