4L1O Oxidoreductase Inhibitor date Jun 03, 2013
title Crystal Structure Of Human Aldh3a1 With Inhibitor 1-{[4-(1,3 Benzodioxol-5-Ylmethyl)Piperazin-1-Yl]Methyl}-1h-Indole-2,3
authors T.D.Hurley, B.Parajuli
compound source
Molecule: Aldehyde Dehydrogenase
Chain: A, B
Synonym: Aldhiii, Aldehyde Dehydrogenase 3, Aldehyde Dehydr Family 3 Member A1;
Ec: 1.2.1.5
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh3, Aldh3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.257 86.396 170.225 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand 1VL, ACT, K enzyme Oxidoreductase E.C.1.2.1.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (161 Kb) [Save to disk]
  • Biological Unit Coordinates (4l1o.pdb1.gz) 156 Kb
  • LPC: Ligand-Protein Contacts for 4L1O
  • CSU: Contacts of Structural Units for 4L1O
  • Structure Factors (545 Kb)
  • Retrieve 4L1O in mmCIF format [Save to disk]
  • Re-refined 4l1o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L1O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L1O
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4L1O, from MSDmotif at EBI
  • Fold representative 4l1o from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l1o_B] [4l1o_A] [4l1o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4L1O
  • Community annotation for 4L1O at PDBWiki (http://pdbwiki.org)

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