4L3K Crystal structure of Sporosarcina pasteurii UreE bound to Ni2+ and Zn2+ date
authors Zambelli, B., Banaszak, K., Merloni, A., Kiliszek, A., Rypniewski, W.R., Ciurli, S.
compound source
symmetry
R_factor
R_Free 0.20698
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.88
ligand NI, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSelectivity of Ni(II) and Zn(II) binding to Sporosarcina pasteurii UreE, a metallochaperone in the urease assembly: a calorimetric and crystallographic study., Zambelli B, Banaszak K, Merloni A, Kiliszek A, Rypniewski W, Ciurli S, J Biol Inorg Chem. 2013 Dec;18(8):1005-17. doi: 10.1007/s00775-013-1049-6. Epub, 2013 Oct 15. PMID:24126709
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (4l3k.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 4L3K
  • CSU: Contacts of Structural Units for 4L3K
  • Structure Factors (289 Kb)
  • Retrieve 4L3K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L3K from S2C, [Save to disk]
  • Re-refined 4l3k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L3K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L3K
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L3K, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l3k_B] [4l3k] [4l3k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L3K: [UreE_N ] by SMART
  • Other resources with information on 4L3K
  • Community annotation for 4L3K at PDBWiki (http://pdbwiki.org)

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