4L3O	Crystal Structure of SIRT2 in complex with the macrocyclic peptide S2iL5	date	2013-06-06
authors	Yamagata, K., Nishimasu, H., Ishitani, R., Nureki, O.
compound		source
symmetry		R_factor R_Free 0.2629
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.52
ligand	ACY, EDO, FAK, MES, NH2, ZN	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural Basis for Potent Inhibition of SIRT2 Deacetylase by a Macrocyclic Peptide Inducing Dynamic Structural Change., Yamagata K, Goto Y, Nishimasu H, Morimoto J, Ishitani R, Dohmae N, Takeda N, Nagai R, Komuro I, Suga H, Nureki O, Structure. 2014 Feb 4;22(2):345-52. doi: 10.1016/j.str.2013.12.001. Epub 2014 Jan, 2. PMID:24389023

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk] Biological Unit Coordinates (4l3o.pdb1.gz) 57 Kb Biological Unit Coordinates (4l3o.pdb2.gz) 56 Kb Biological Unit Coordinates (4l3o.pdb3.gz) 56 Kb Biological Unit Coordinates (4l3o.pdb4.gz) 55 Kb LPC: Ligand-Protein Contacts for 4L3O CSU: Contacts of Structural Units for 4L3O Structure Factors (540 Kb) Retrieve 4L3O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4L3O from S2C, [Save to disk] Re-refined 4l3o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4L3O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4L3O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4L3O, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4l3o_F] [4l3o_C] [4l3o] [4l3o_A] [4l3o_B] [4l3o_D] [4l3o_H] [4l3o_G] [4l3o_E] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 4L3O

Community annotation for 4L3O at PDBWiki (http://pdbwiki.org)

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