4L52 Crystal Structure of 1-(4-{4-[7-amino-2-(1,2,3-benzothiadiazol-7-yl)furo[2,3-c]pyridin-4-yl]-1H-pyrazol-1-yl}piperidin-1-yl)ethan-1-one bound to TAK1-TAB1 date
authors Wang, J., Hornberger, K.R., Crew, A.P., Jestel, A., Maskos, K., Moertl, M.
compound source
symmetry
R_factor
R_Free 0.22953
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.54
ligand 1UL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and optimization of 7-aminofuro[2,3-c]pyridine inhibitors of TAK1., Hornberger KR, Berger DM, Crew AP, Dong H, Kleinberg A, Li AH, Medeiros MR, Mulvihill MJ, Siu K, Tarrant J, Wang J, Weng F, Wilde VL, Albertella M, Bittner M, Cooke A, Gray MJ, Maresca P, May E, Meyn P, Peick W Jr, Romashko D, Tanowitz M, Tokar B, Bioorg Med Chem Lett. 2013 Aug 15;23(16):4517-22. doi:, 10.1016/j.bmcl.2013.06.053. Epub 2013 Jun 25. PMID:23850198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (4l52.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 4L52
  • CSU: Contacts of Structural Units for 4L52
  • Structure Factors (166 Kb)
  • Retrieve 4L52 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L52 from S2C, [Save to disk]
  • Re-refined 4l52 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L52 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L52
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L52, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l52] [4l52_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L52: [STYKc ] by SMART
    • Other resources with information on 4L52
  • Community annotation for 4L52 at PDBWiki (http://pdbwiki.org)

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