4L57	Hydrolase	date	Jun 10, 2013
title	High Resolutin Structure Of Human Cytosolic 5'(3')- Deoxyribonucleotidase
authors	P.Pachl, J.Brynda, P.Rezacova
compound		source
Molecule: 5'(3')-Deoxyribonucleotidase, Cytosolic Type Chain: A, B Fragment: Unp Residues 1-195 Synonym: Cytosolic 5',3'-Pyrimidine Nucleotidase, Deoxy-5'- Nucleotidase 1, Dnt-1; Ec: 3.1.3.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Dnt1, Nt5c, Umph2 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet 22
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.128 46.493 61.409 68.16 81.47 75.28
method	X-Ray Diffraction	resolution	1.08 Å
ligand	GOL, MG, NA, PO4	enzyme	Hydrolase E.C.3.1.3 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structures of human cytosolic and mitochondrial nucleotidases: implications for structure-based design of selective inhibitors., Pachl P, Fabry M, Rosenberg I, Simak O, Rezacova P, Brynda J, Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):461-70. doi:, 10.1107/S1399004713030502. Epub 2014 Jan 29. PMID:24531480

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (4l57.pdb1.gz) 150 Kb LPC: Ligand-Protein Contacts for 4L57 CSU: Contacts of Structural Units for 4L57 Structure Factors (1181 Kb) Retrieve 4L57 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4L57 from S2C, [Save to disk] Re-refined 4l57 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4L57 in 3D

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Visual 3D analysis of 4L57

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 4L57, from MSDmotif at EBI Fold representative 4l57 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4l57_B] [4l57] [4l57_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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