4L59 Transcription date Jun 10, 2013
title Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3 And Complex
authors N.Zhong, A.Dong, M.Ravichandran, M.A.Camerino, B.M.Dickson, L.I.J B.M.Baughman, J.L.Norris, D.B.Kireev, W.P.Janzen, S.Graslund, S. C.Bountra, A.M.Edwards, C.H.Arrowsmith, P.J.Brown, Structural G Consortium (Sgc)
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein 3
Chain: A
Synonym: H-L(3)Mbt-Like Protein 3, L(3)Mbt-Like Protein 3,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L3mbtl3, Kiaa1798, Mbt1
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21-V2r-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28-Mhl
symmetry Space Group: P 31 2 1
R_factor 0.212 R_Free 0.250
length a length b length c angle alpha angle beta angle gamma
104.798 104.798 110.644 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.29 Å
ligand 1VZ, SO4, UNX enzyme

Primary referenceThe structure-activity relationships of L3MBTL3 inhibitors: flexibility of the dimer interface., Camerino MA, Zhong N, Dong A, Dickson BM, James LI, Baughman BM, Norris JL, Kireev DB, Janzen WP, Arrowsmith CH, Frye SV, Medchemcomm. 2013 Nov;4(11):1501-1507. doi: 10.1039/C3MD00197K. PMID:24466405
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (4l59.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 4L59
  • CSU: Contacts of Structural Units for 4L59
  • Structure Factors (1320 Kb)
  • Retrieve 4L59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L59 from S2C, [Save to disk]
  • Re-refined 4l59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4L59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4L59
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4L59, from MSDmotif at EBI
  • Fold representative 4l59 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l59_A] [4l59]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L59: [MBT ] by SMART
  • Other resources with information on 4L59
  • Community annotation for 4L59 at PDBWiki (http://pdbwiki.org)

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