4L6V Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803 date
authors Mazor, Y., Nataf, D., Toporik, H., Nelson, N.
compound source
symmetry
R_factor
R_Free 0.2972
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.80
ligand BCR, CLA, LHG, LMG, PQN, SF4 enzyme
Gene BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; BEST7613 ; MYO ; MYO ; MYO ; MYO ; MYO ; MYO ; MYO ; MYO ; MYO
Gene
Ontology
ChainFunctionProcessComponent
2, B, b
  • electron transfer activity


    • 7, M, m


    C, 3, c


    E, e, 5


    F, f, 6


    K, k, 0


    L, l, 8


    a, 1, A
  • electron transfer activity


    • d, 4, D


    i, 9, I


    Primary referenceCrystal structures of virus-like photosystem I complexes from the mesophilic cyanobacterium Synechocystis PCC 6803., Mazor Y, Nataf D, Toporik H, Nelson N, Elife. 2013 Jan 1;3:e01496. doi: 10.7554/eLife.01496. PMID:24473073
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3067 Kb) [Save to disk]
  • Biological Unit Coordinates (4l6v.pdb1.gz) 980 Kb
  • Biological Unit Coordinates (4l6v.pdb2.gz) 1003 Kb
  • Biological Unit Coordinates (4l6v.pdb3.gz) 1001 Kb
  • LPC: Ligand-Protein Contacts for 4L6V
  • CSU: Contacts of Structural Units for 4L6V
  • Structure Factors (2444 Kb)
  • Retrieve 4L6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L6V from S2C, [Save to disk]
  • Re-refined 4l6v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L6V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L6V, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l6v] [4l6v_7] [4l6v_M] [4l6v_4] [4l6v_A] [4l6v_0] [4l6v_C] [4l6v_B] [4l6v_a] [4l6v_m] [4l6v_e] [4l6v_5] [4l6v_c] [4l6v_1] [4l6v_K] [4l6v_b] [4l6v_f] [4l6v_d] [4l6v_k] [4l6v_E] [4l6v_2] [4l6v_i] [4l6v_L] [4l6v_I] [4l6v_l] [4l6v_8] [4l6v_3] [4l6v_F] [4l6v_9] [4l6v_D] [4l6v_6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4L6V
  • Community annotation for 4L6V at PDBWiki (http://pdbwiki.org)

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