4L7E Three dimensional structure of mutant D78A of human HD domain-containing protein 2, Genomics Consortium (NESG) Target HR6723 date
authors Kuzin, A., Su, M., Yakunin, A., Beloglazova, N., Seetharaman, J., Maglaqui, M., Xiao, R., Lee, D., Brown, G., Flick, R., Everett, J.K., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., NESG, Northeast.Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2151
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.23
ligand CL, MSE, PEG, SEP, UNL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • 5'-deoxynucleotidase activit...


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (138 Kb) [Save to disk]
  • Biological Unit Coordinates (4l7e.pdb1.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 4L7E
  • CSU: Contacts of Structural Units for 4L7E
  • Structure Factors (131 Kb)
  • Retrieve 4L7E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4L7E from S2C, [Save to disk]
  • Re-refined 4l7e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4L7E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4L7E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4L7E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4l7e_B] [4l7e_A] [4l7e]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4L7E: [HDc ] by SMART
    • Other resources with information on 4L7E
  • Community annotation for 4L7E at PDBWiki (http://pdbwiki.org)

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