4LAE Structure-Based Design of New Dihydrofolate Reductase Antibacterial Agents: 7-(Benzimidazol-1-yl)-2,4-diaminoquinazolines date 2013-06-19
authors Hilgers, M.T.
compound source
symmetry
R_factor
R_Free 0.2245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.69
ligand 1VM, NAP enzyme
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceStructure-Based Design of New Dihydrofolate Reductase Antibacterial Agents: 7-(Benzimidazol-1-yl)-2,4-diaminoquinazolines., Lam T, Hilgers MT, Cunningham ML, Kwan BP, Nelson KJ, Brown-Driver V, Ong V, Trzoss M, Hough G, Shaw KJ, Finn J, J Med Chem. 2014 Feb 13;57(3):651-68. doi: 10.1021/jm401204g. Epub 2014 Jan 16. PMID:24428639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (4lae.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4LAE
  • CSU: Contacts of Structural Units for 4LAE
  • Structure Factors (330 Kb)
  • Retrieve 4LAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LAE from S2C, [Save to disk]
  • Re-refined 4lae structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4LAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4LAE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LAE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lae] [4lae_X]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4LAE
  • Community annotation for 4LAE at PDBWiki (http://pdbwiki.org)

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