4LAV Isomerase date Jun 20, 2013
title Crystal Structure Analysis Of Fkbp52, Crystal Form II
authors A.Bracher, C.Kozany, A.Haehle, P.Wild, M.Zacharias, F.Hausch
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Fkbp4
Chain: A, B
Fragment: Unp Residues 16-260
Synonym: Ppiase Fkbp4, 52 Kda Fk506-Binding Protein, 52 Kda Fkbp-52, 59 Kda Immunophilin, P59, Fk506-Binding Protein 4, Fkbp59, Hsp-Binding Immunophilin, Hbi, Immunophilin Fkbp52,
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fkbp4, Fkbp52
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon+ Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex-Htb
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.297 125.801 50.539 90.00 92.01 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme Isomerase E.C.5.2.1.8 BRENDA
Primary referenceCrystal Structures of the Free and Ligand-Bound FK1-FK2 Domain Segment of FKBP52 Reveal a Flexible Inter-Domain Hinge., Bracher A, Kozany C, Hahle A, Wild P, Zacharias M, Hausch F, J Mol Biol. 2013 Aug 8. pii: S0022-2836(13)00502-0. doi:, 10.1016/j.jmb.2013.07.041. PMID:23933011
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (4lav.pdb1.gz) 85 Kb
  • Biological Unit Coordinates (4lav.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 4LAV
  • CSU: Contacts of Structural Units for 4LAV
  • Structure Factors (752 Kb)
  • Retrieve 4LAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LAV from S2C, [Save to disk]
  • Re-refined 4lav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LAV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LAV, from MSDmotif at EBI
  • Fold representative 4lav from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lav] [4lav_B] [4lav_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4LAV
  • Community annotation for 4LAV at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science