4LEO Transferase Immune System date Jun 26, 2013
title Crystal Structure Of Anti-Her3 Fab Rg7116 In Complex With Th Extracellular Domains Of Human Her3 (Erbb3)
authors C.B.Schiller, K.P.Hopfner
compound source
Molecule: Rg7116 Fab Heavy Chain
Chain: A
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Rg7116 Fab Light Chain
Chain: B
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029

Molecule: Receptor Tyrosine-Protein Kinase Erbb-3
Chain: C
Fragment: Unp Residues 20-631
Synonym: Her3 (Erbb3) Extracellular Domains, Proto-Oncogene Protein C-Erbb-3, Tyrosine Kinase-Type Cell Surface Recepto
Ec: 2.7.10.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Erbb3, Her3
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
symmetry Space Group: P 1
R_factor 0.228 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.458 59.359 103.661 97.64 106.85 96.83
method X-Ray Diffractionresolution 2.64 Å
ligand NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceRG7116, a therapeutic antibody that binds the inactive HER3 receptor and is optimized for immune effector activation., Mirschberger C, Schiller CB, Schraml M, Dimoudis N, Friess T, Gerdes CA, Reiff U, Lifke V, Hoelzlwimmer G, Kolm I, Hopfner KP, Niederfellner G, Bossenmaier B, Cancer Res. 2013 Jun 18. PMID:23780344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (4leo.pdb1.gz) 339 Kb
  • LPC: Ligand-Protein Contacts for 4LEO
  • CSU: Contacts of Structural Units for 4LEO
  • Structure Factors (207 Kb)
  • Retrieve 4LEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LEO from S2C, [Save to disk]
  • Re-refined 4leo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LEO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LEO, from MSDmotif at EBI
  • Fold representative 4leo from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4leo_B] [4leo_A] [4leo] [4leo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LEO: [FU] [IG_like] [IGv ] by SMART
  • Other resources with information on 4LEO
  • Community annotation for 4LEO at PDBWiki (http://pdbwiki.org)

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