4LEO Crystal structure of anti-HER3 Fab RG7116 in complex with the extracellular domains of human Her3 (ERBB3) date
authors Schiller, C.B., Hopfner, K.P.
compound source
symmetry
R_factor
R_Free 0.2578
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.64
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceRG7116, a therapeutic antibody that binds the inactive HER3 receptor and is optimized for immune effector activation., Mirschberger C, Schiller CB, Schraml M, Dimoudis N, Friess T, Gerdes CA, Reiff U, Lifke V, Hoelzlwimmer G, Kolm I, Hopfner KP, Niederfellner G, Bossenmaier B, Cancer Res. 2013 Jun 18. PMID:23780344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk]
  • Biological Unit Coordinates (4leo.pdb1.gz) 331 Kb
  • LPC: Ligand-Protein Contacts for 4LEO
  • CSU: Contacts of Structural Units for 4LEO
  • Structure Factors (207 Kb)
  • Retrieve 4LEO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LEO from S2C, [Save to disk]
  • Re-refined 4leo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LEO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LEO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4LEO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4leo_B] [4leo_A] [4leo] [4leo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4LEO: [FU] [IG_like] [IGv ] by SMART
  • Other resources with information on 4LEO
  • Community annotation for 4LEO at PDBWiki (http://pdbwiki.org)

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