4LG8 Dna Binding Protein date Jun 27, 2013
title Crystal Structure Of Prpf19 Wd40 Repeats
authors C.Xu, W.Tempel, H.He, E.Dobrovetsky, A.Seitova, C.Bountra, C.H.Arr A.M.Edwards, J.Min, Structural Genomics Consortium (Sgc)
compound source
Molecule: Pre-Mrna-Processing Factor 19
Chain: A
Fragment: Unp Residues 169-504
Synonym: Nuclear Matrix Protein 200, Prp19pso4 Homolog, Hp Senescence Evasion Factor;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Sf9
Gene: Prpf19, Nmp200, Prp19, Snev
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfboh-Mhl
symmetry Space Group: P 31 2 1
R_factor 0.156 R_Free 0.197
length a length b length c angle alpha angle beta angle gamma
83.055 83.055 75.533 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.89 Å
ligand NA, UNX enzyme

Primary referenceCrystal structure of the WD40 domain of human PRPF19., Zhang Y, Li Y, Liang X, Zhu Z, Sun H, He H, Min J, Liao S, Liu Y, Biochem Biophys Res Commun. 2017 Nov 25;493(3):1250-1253. doi:, 10.1016/j.bbrc.2017.09.145. Epub 2017 Sep 28. PMID:28962858
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (4lg8.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 4LG8
  • CSU: Contacts of Structural Units for 4LG8
  • Structure Factors (3363 Kb)
  • Retrieve 4LG8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4LG8 from S2C, [Save to disk]
  • Re-refined 4lg8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4LG8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4LG8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4LG8, from MSDmotif at EBI
  • Fold representative 4lg8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4lg8] [4lg8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4LG8: [WD40 ] by SMART
  • Other resources with information on 4LG8
  • Community annotation for 4LG8 at PDBWiki (http://pdbwiki.org)

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